Originally broadcast on television during the 2006-2007 season.

Contains all 20 episodes from the third season.

Special features: Disc one: Audio commentary on all episodes; "Inside the Stargate Atlantis visual FX department" featurette; "Mission directive: Sateda" featuring Robert C. Cooper; exclusive still photo gallery & production design gallery. Disc two: Audio commentary on "Progeny, " "Common ground" and "McKay & Mrs. Miller; " profile on: Rachel Luttrell; "Mission directive: Progeny" featuring Andy Mikita; exclusive still photo gallery & production design gallery. Disc three: Audio commentary on all espisodes; "General O'Neill goes to Atlantis" featurette; "Mission directive: Phantoms" featuring Martin Wood ; exclusive still photo gallery & production design gallery. Disc four: Audio commentary on all episodes; "Masters of the alien" featurette; "Mission directive: The game" featuring William Waring ; exclusive still photo gallery & production design gallery. Disc five: Audio commentary on all episodes; "Mission directive: First strike" featuring Martin Wood; "Stargate Atlantis: a look back on season 3 with Martin Gero" featurette; exclusive still photo gallery & production design gallery.

Special features and enhancements may vary by copy.

DVD, region 1, NTSC, widescreen (1.78:1) presentation; Dolby Digital 5.1 surround, Dolby surround.